chr33_13

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

24.4

E-value:

0.008

From sequence:

1494866

To sequence:

1494712

Alignments:

                                                                                  v  v   v                       NC
                  ::::::::::::::::<<<-<<<<<<<-<<<<<<..........................-<<<<<-<---<<_____________________ CS
  RF00690       1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG..........................aGCAuGaGAUGGaGCUaucAAcaAauugUGAgAa 68     
                  AA+ G U   G GA+  :G  :GGG::G:GG :G                          +GC  G  AUG+ GC A CA          AG  
    chr33 1494866 AAACGAUACAGCGAG-GGGUGGGGGGGGGGGGGGgggaggagaggggaaggcgacccguaUGCUUG--AUGA-GCAAGCAGA--------AGGC 1494785
                  *******99999988.889888888888888888999***************99999999788777..6662.333333333........2333 PP

                                           v      v v                                          NC
                  ___________________~~~~~>>----..>>>>>>-.>>>>>>->>>>>>>->>>:.:::::::::::::::: CS
  RF00690      69 aaagaUGgaauUGUUgUuG*[1]*uCcCuC..CCaUGCA.CUGCcUCuUCCCuGGCUCC.uuucuCuccucuuUuu 136    
                  A ++A   AA+ GUU+U G             +C  GCA C: CC:C::CCC: GC: C U +CUCU+CUC UU++
    chr33 1494784 AGUAAAACAACCGUUUUAG*[8]*------guACCGGCAgCCCCCCCCCCCCCCGCCUCgUCGCUCUUCUCGUUAC 1494712
                  3333333445555555555..4........445778999****************9988899************** PP

RNAfold
>chr33_13
UAACGAGAAGAGCGACGAGGCGGGGGGGGGGGGGGCUGCCGGUACAUUAG
UGGCUAAAACGGUUGUUUUACUGCCUUCUGCUUGCUCAUCAAGCAUACGG
GUCGCCUUCCCCUCUCCUCCCCCCCCCCCCCCCCCACCCCUCGCUGUAUC
GUUU
.(((((..(.(((((.(.((.((((((((((((((..((((.((...)).)))).....((((......)))).....((((((.....))))))...(((.......)))..........)))))))))))))).))).))))).).))))). (-73.70)

Length sequence

: 154

Length match:

153