chr33_14

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.8

E-value:

0.0029

From sequence:

704868

To sequence:

704695

Alignments:

                                              v vvv    v                                                          NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_____________.................................... CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAau.................................... 60    
                 AA+  G+   +AGA++GAGA AG:GA  A G    G A :+GA  GA  U   AA+  AU                                    
    chr33 704868 AAAGAGAACAAAGAGAGAGAGAGAGAGAAGG----GGAGAGGAAUGACAUCGAAAUUGAUgggagcgcaacuugccucucagcacaacaccgccgc 704777
                 ***9999999999999999999999999888....9999999999997666666664444556566666666666655555555555555555555 PP

                                             v    vvv v                               NC
                 ...........___~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     61 ...........ugU*[25]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                                     UCCC CC: U C +U+C UC UC:CU GCUCC   CUC+CCUC  U U
    chr33 704776 aucaccgucuu--C*[24]*UCCCCCCUGUCC-UUUCGUCUUCUCUCGCUCC-GCCUCACCUCGAUCU 704695
                 55555555554..0...6..999999999999.8999*************97.5688999******** PP

>>

RNAfold
>chr33_14
GAUCGAGGUGAGGCGGAGCGAGAGAAGACGAAAGGACAGGGGGGACAUGC
CUCUCUCUCUCUUUAUCUUGAAGACGGUGAUGCGGCGGUGUUGUGCUGAG
AGGCAAGUUGCGCUCCCAUCAAUUUCGAUGUCAUUCCUCUCCCCUUCUCU
CUCUCUCUCUCUUUGUUCUCUUU
((.(((((.(((..((((.((((((((..((.((((.(((((((.....)))))))((.((((((...)))))).))(((((.((.(((((..((((....))))....)))))))))))).............)))).))..)))))))).))))))).))))).))..... (-59.30)

Length sequence

: 173

Length match:

172