chr33_15

cmsearch-Rfam

Family :

MIR530

Id:

RF01005

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01005

Description:

not description

Score:

35.3

E-value:

0.00069

From sequence:

430569

To sequence:

430460

Alignments:

                  v    vv                                                                                         NC
                 <<<<<<<<<--<<-<<<<<<<<<<<<<<<<<<<<<<<<<--------------~~~~~~----------------->>>>>>>>>>>>>>>>>>>> CS
  RF01005      1 gCCAAcAUGUUGCCUUuAuCUGCAuuuGCACCUGCAcCUUaugugUuUuUuUu*[65]*uuaAAcuAAuaAgcUugAGgUGCAGGUGCaagUGCAG 155   
                 : C::C    UG:CU::::::G A: ::CA  U::A: U ++ U U U U U       U+ A +UA   A +U++A :U::A  UG:: :U C::
    chr33 430569 CACCGCGUCGUGUCUGCGCGCGUACGUACAUAUAUAUAUAUA-UAUAUAUAUA*[ 4]*UAUAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGCGC 430477
                 ***********************************9999433.3333333333...3..2333344445788888999****************** PP

                          vv    v  NC
                 >>>>>->>>>>>>>>>> CS
  RF01005    156 gUgAAUGCCAUgUUGGu 172   
                 ::::A :C   G::G :
    chr33 430476 GCGCACACGCGGCGGGG 430460
                 ***************** PP

>>

RNAfold
>chr33_15
UGCGCUGUGCCUCUUUUUCCCCCUUGUGCUCCCCGCCGCGUGUGCGCGCG
CACACACACAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA
UAUAUAUAUAUGUACGUACGCGCGCAGACACGACGCGGUGAACCAAAGGG
GCAAAAAGAAGCACAGCCCAC
((.(((((((.(((((((.((((((....((.((((..(((((..((((((..((..((((((((((((((((((((((((((....))))))))))))))))))))))))))..))..))))))..)))))..)))).))....)))))).))))))).))))))).)). (-89.60)

Length sequence

: 171

Length match:

108