chr33_16

cmsearch-Rfam

Family :

MIR530

Id:

RF01005

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01005

Description:

not description

Score:

32.4

E-value:

0.0037

From sequence:

619886

To sequence:

619815

Alignments:

                            v         v                                        v         v          NC
                 <<<<<<<<<--<<-<<<<<<<<<<<<<<<<<<<<<<<<<~~~~~~>>>>>>>>>>>>>>>>>>>>>>>>>->>>>>>>>>>> CS
  RF01005      1 gCCAAcAUGUUGCCUUuAuCUGCAuuuGCACCUGCAcCU*[96]*AGgUGCAGGUGCaagUGCAGgUgAAUGCCAUgUUGGu 172   
                 :CC:ACA::     ::UA: : CA::U:CA: U: A: U      A :U :A :UG:A::UG : :UG::U  ::UGU:GG:
    chr33 619886 ACCCACACA-----CAUACACCCACAUACAUAUAUAUGU*[ 2]*AUGUGUAUAUGUAUGUGCGUGUGUGU-GUGUGUGGGU 619815
                 ******998.....**********************987...6..789**********************7.589******* PP

RNAfold
>chr33_16
AAUACAUCUAUACAUGUCUAUACACACACACACACACGCAUACACCCACA
CCCACACACACACACACGCACAUACAUAUACACAUAUACAUAUAUAUGUA
UGUGGGUGUAUGUGUGUGGGUGUGUGUCUCUGUCGGUGUUCAUAAGAGAG
AGAGGGGGGGAGAUGCACAGA
...((((......))))....................((((.(.(((.(.(((.......(((((((.(((((((((((((.(((((((((....))))))))).))))))))))))).)))))))(((((.((...........)).)))))))))))).)))))..... (-64.20)

Length sequence

: 171

Length match:

70