chr33_17

cmsearch-Rfam

Family :

mir-558

Id:

RF01021

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01021

Description:

not description

Score:

29.0

E-value:

0.0075

From sequence:

878230

To sequence:

878340

Alignments:

                                  v v                           v v            NC
                 ::::::::<<-<<<-<<<<<<-<<<<<<<<<~~~~~~>>>>>>>>>>>>>>>->>>->>:: CS
  RF01021      1 gUGUGUGUGcGcguguGuGguUauuuuGGua*[39]*uaCCaaaauacCaCaAacgGgCUG 94    
                 GUGUGUGUG:G:GUGUG G :U:U:U::GU:      :AC::A:A:: C CA AC:G:C  
    chr33 878230 GUGUGUGUGUGUGUGUGUGUGUGUGUGUGUG*[56]*CACACACACCCCUCACACAGGCCC 878340
                 *****************************98...9..8*********************** PP

RNAfold
>chr33_17
UGUGUGUGUGUGUGUGUGUGUGUGUGUGUGACAUUAGGCCUCUUCCCGUU
CAGUCCGCACCGCUUCGGAGACACUCUCCUCCCCCCCACACACACCCCUC
ACACAGGCCC
.((.((((((.(.(((((((((.(((((.(((....((.......)).....))))))))......(((((...))))).......))))))))).)..)))))).)).. (-38.30)

Length sequence

: 110

Length match:

109