chr33_18

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

37.4

E-value:

0.0028

From sequence:

129372

To sequence:

129231

Alignments:

                         v            v       v                v       v          v           NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<~~~~~~>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGu*[ 7]*gUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 :G:G:G:G GUG GUGUGUGU UG:G  :  GUG:      :UCC  :  C:UG ACACACCCAC C:C:C:C:  
    chr33 129372 UGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGG*[72]*CUCCGGAUGCGUGGACACACCCACCCACACACAUA 129231
                 ********************************997...*..589******************************** PP

>>

RNAfold
>chr33_18
AUGUGUGUGGGUGGGUGUGUCCACGCAUCCGGAGGCGGGGUGAGGUGUCU
GGUAAUGGGGAGUCAACGACUGCCUCCUUUCCUUUUCCAGGCCUCACUUC
AGAUUGCCACACACACACACACACACACACACACACACACA
.((((((((.(((.((((((((........)))(((((((((((((..((((.((.((((((.((.....)).))))...)).)).)))))))))))))).....))).))))).))).)))))))).............. (-54.40)

Length sequence

: 141

Length match:

140