chr33_19

cmsearch-Rfam

Family :

mir-672

Id:

RF00911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00911

Description:

not description

Score:

30.0

E-value:

0.0059

From sequence:

430565

To sequence:

430468

Alignments:

                                                   v v                                  vv                        NC
                 ::::::::::::::<<<<<<-<<<<<<<<-<<<<<-<<<<<<<<<<<_____________.>>>>>>>>>>>>>>>>->>>>>>>>->>>>>>::: CS
  RF00911      1 gAugGuuAUcUAGccCuucaGuuucgaggUugguGUaCuGuGuGuGaGUAUAuAUAUUUA.uCaCaCaCaGuCaccaUccucgaaagugagGgUGC 95    
                 G     U UCU   C::::A   :C: :: U:::  + U:U:U:U:: UAUAUAUAU UA ::A:A:A:A  +:::AU:: :G:  GU::::G GC
    chr33 430565 GCGUCGUGUCUGCGCGCGUACGUACAUAUAUAUA--UAUAUAUAUAUAUAUAUAUAUAUAuAUAUAUAUAU-AUAUAUAUGUGUGUGUGCGCGCGC 430473
                 *999999999887777777765555555555555..44455555444466666666644425666666665.577888888888889********* PP

                       NC
                 ::::: CS
  RF00911     96 AcaUc 100   
                 ACA  
    chr33 430472 ACACG 430468
                 ***** PP

RNAfold
>chr33_19
CGUGUGCGCGCGCACACACACAUAUAUAUAUAUAUAUAUAUAUAUAUAUA
UAUAUAUAUAUAUAUAUAUAUAUGUACGUACGCGCGCAGACACGACGCG
(((((..((((((..((..((((((((((((((((((((((((((....))))))))))))))))))))))))))..))..))))))..)))))..... (-48.70)

Length sequence

: 99

Length match:

96