chr33_2

cmsearch-Rfam

Family :

HOXA11-AS1_6

Id:

RF02142

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010629 negative regulation of gene expression

Description:

not description

Score:

20.2

E-value:

0.0056

From sequence:

1165892

To sequence:

1166016

Alignments:

                  :::::::::::.........::::::::::::::::::::::::::::::::::::::....:::::::::::::::::::::.::::::..:: CS
  RF02142      33 gGCUaaUGCAA.........GAgGCCAAAAAUGUUUuGGAGGAAGAAAAACAAAGGCA....GGAAGUGGCgGCgGcCUGACG.GUGCGU..GU 110    
                   GCU  UG  A         GAg CC AAA  G        GAA AA AACA  G CA      AAGUGGC G gG  UG    GUG GU  GU
    chr33 1165892 UGCUUCUGAUAgaugcaaauGAGACCGAAACAGCCA-A---GAACAAGAACAGCGACAcccgCAAAGUGGCUGAGGUAUGGAAcGUGUGUggGU 1165981
                  344444444440000000114555566666565544.3...3444444444444433311113689**********999854335555551156 PP

                  ::::::::::::::::::::::::..........: CS
  RF02142     111 GUGUCUgcGgaGAAGGGAGGGAGc..........c 135    
                  GUGU UgcGg G  GGG GGG G           c
    chr33 1165982 GUGUGUGCGGGGGGGGGGGGGGGGagagcgccuaC 1166016
                  66666666655554444333332212222222221 PP

>>

RNAfold
>chr33_2
UCUCUCUCGCGUCGAGAGAACUCUGGUGCUUCUGAUAGAUGCAAAUGAGA
CCGAAACAGCCAAGAACAAGAACAGCGACACCCGCAAAGUGGCUGAGGUA
UGGAACGUGUGUGGGUGUGUGUGCGGGGGGGGGGGGGGGGAGAGCGCCUA
CACUUUAGUCUGAGGCUCUCUCUCUCUU
(((((((((((((....)).(((...(((.(((...))).)))...))).........................((.(((((((((..((..(........)..))...))))))))))).)))))))))))..((((((((((.((((.((........)))))).)))))))))). (-61.10)

Length sequence

: 178

Length match:

123