chr33_23

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

27.8

E-value:

0.0012

From sequence:

1490661

To sequence:

1490818

Alignments:

                                                                                                                 NC
                  <<<<------------------------------------------------------------------------------------------ CS
  RF01295       1 UGGAAAUGAUGAAAUAGAGAUAAUUGGGUGUUGAAUGUUGUaUGAuUGGAAauUUUuAAUAugUAugUUAAgUAAUucuuauAAgUUuAaugUU 94     
                  :G: AAUGA G   UAGAG U  U  GGUGUUGA U   G +    UG   AUU  UAA  U+ AU UU        +   +A   UUAA GU 
    chr33 1490661 CGAUAAUGACGGCGUAGAGGUGGU--GGUGUUGAGUCCAGCGAAGCUGCUGAUUAGUAAAGUUGAUUUUC------CAGAGAAGAAUUAACGUC 1490746
                  *******************99765..89******999977665555555555555555444444444333......333333333333333333 PP

                                                                                 NC
                  ---.----------------------------------------------~~~~~~~>>>>: CS
  RF01295      95 Uua.UaGauacuUaauAGaGuGUGUGUGUGugUGUGUGUGUgcuUgUGga*[182]*UCCAA 330    
                  UU  U  AU C      G G+GUGUGU UGUGUGUGUGUGUG+ UGUG          :C: 
    chr33 1490747 UUUcUGUAUCCGCGCGCGCGAGUGUGUAUGUGUGUGUGUGUGUGUGUGUG*[ 17]*AUCGU 1490818
                  33303333334444444444455555555555555555555444444433....7..***** PP

>>

RNAfold
>chr33_23
ACAGAGAUGCACCUCCUUCGCCCGGGUAGCGUAAUUCUGGUACUUCCUUU
UCUGUUCUCCACCCCACCCCCUUCGGUUGCGGUGACGAUAAUGACGGCGU
AGAGGUGGUGGUGUUGAGUCCAGCGAAGCUGCUGAUUAGUAAAGUUGAUU
UUCCAGAGAAGAAUUAACGUCUUUCUGUAUCCGCGCGCGCGAGUGUGUAU
GUGUGUGUGUGUGUGUGUGUGUGCGGCUCUGUGCUUAUAUCGUUCUUCCU
UGUUGUACUGCCAACAGCGCGUGUUGAUUCCUACUCUCUUUGUUUACUUC
CUUUAUUUCGCUCUUCUCUUUUUCGCCGC
.........((((((...((((.(((((.((......)).))))).....((...((..(((((.(((......))).).))))..))....)).))))..))))))((((((..(((...(((((((.....((..((((((...........(((((.(((((((((........(((.((((((((((........)))))))))).)))(((((.(((..(((...((((..(((..(.....)..))).)))).))).)))))))))))))))))....)))))...)))))))).....)))))))...))).....)))))) (-81.20)

Length sequence

: 329

Length match:

156