chr33_24

cmsearch-Rfam

Family :

STnc400

Id:

RF02058

Type:

Gene;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

34.9

E-value:

0.0011

From sequence:

401335

To sequence:

401196

Alignments:

                   v                   v                  v                    v                       v    v     NC
                 ::<<<--<<<<<<<<<<<<<<<<<<<<<<~~~~~~>>>>>>>.>>>>>>>>>>>>>>>-->>>-------------<<<<<<<<<<<____>>>>> CS
  RF02058      1 UagGGuUGCGcuaGaucgucguCuacCGa*[18]*uCGguaG.acgacgauCuagCGCuUCCuCUAGUAAAGAGUaaaaagcggggcaAAAgcccc 107   
                   +::U ::::U:G::C:U::U UA: G:      :C :UA  A::A:G::C:A:::: U:: C  G AAAG    ::::G:GGGG AAAA CCCC
    chr33 401335 AGAAAUAUUUUUCGGGCUUUUUAUAGGGG*[36]*CCUCUAAaAAAAAGCCCGAAAAAGUUU-CCCGAAAAG--GGGGGGGGGGGGAAAAAACCCC 401213
                 *******9999999999999998877666...8..566665516678999999999997755.666666655..55999***************** PP

                                   NC
                 >>>->>>:::::::::: CS
  RF02058    108 gcuauuuaUUaUaAucA 124   
                 :C:+:::  U+U  U  
    chr33 401212 CCCCCCCCCUUUUUUUU 401196
                 ***************** PP

RNAfold
>chr33_24
AAAAAAAGGGGGGGGGGGGGUUUUUUCCCCCCCCCCCCCUUUUCGGGAAA
CUUUUUCGGGCUUUUUUUUAGAGGGGGGGGGAGGCCCCUUCCCAAAAGAG
GUUCCUCUCUCCCCUAUAAAAAGCCCGAAAAAUAUUUCU
...(((((((((((((((((......))))))))))))))))).(((((..(((((((((((((((......((((((((((((..((((.......))))..))))))))))))..)))))))))))))))..))))) (-89.40)

Length sequence

: 139

Length match:

138