chr33_4

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

130.0

E-value:

2.7e-37

From sequence:

116160

To sequence:

115701

Alignments:

                          vv     v                         v  v    v           v   v  v                 vvv       NC
                 :{{{{,,,(((-..(((-((((,,<<<<-~~~~~~>>>>,,<<<<<-<<-<<<<.____>>>>>>->>>>><<<<<<<<<----<<<<<<<<<--- CS
  RF02400      1 GCCggUAcGGCA..GCgcGCaCAcGCgCA*[28]*GcGCAuGCcGCaccccGCa.AAGCuGCgggCGCgGCGCuCuGggGgCCUuGccCCgCGCAC 115   
                  C::G A G  A  GC  GCAC  :::CA      G:::  G :G AC:  GC:   GC:GC :GC C: CGC:CUGG  GCC UGC   GCGC C
    chr33 116160 CCGCGGAGGUCAccGCCGGCAC--CUCCA*[ 4]*GGAGCAGGUGGACUGAGCCgGUGCGGC-AGCGCGGCGCACUGGGGGCCCUGCCGAGCGCGC 116070
                 *****99665552255569999..99987...8..89999999******9999945798999.9******************************** PP

                    v        v         v vv                  v   vv        v   vvv    v  v      v v          v  v NC
                 -<<<________>>>---->>>>->>>>>>>>>>->>>>,)))))))-))),,[[[[[[[[[[[[[[[[[[[[-[[[[-[[[[[[,,,,,,((((( CS
  RF02400    116 UGCuCUUuaCAUaGCCCGACGuGAGggCaCcuCgCGgGCAGuGCuGCGGCCUCGuGuGGGauCGcguCaggacUGaagGaGaGCGAAuCuCaGGGC 211   
                 UGC  U U+C U GC CGACGU A  GCA  UCGCG:GC GUGC GC   CU G:GUG G::+G+G: A GA UGAAGG G GCGAAU   A  G 
    chr33 116069 UGCUGUCUGCGUUGCUCGACGUGAGCGCAUUUCGCGUGCGGUGCUGCAUCCUGGCGUGCGGCUGAGCGAGGACUGAAGGAGAGCGAAUU--AGGGC 115976
                 **************************************************************************************987..779** PP

                             v                v      v                   vv         vv               v       v    NC
                 --((--(((((((((((,,<<<<<<<-<<<-----<<<--<<<..-<<<<<<----<<<.____..>>>-->>>>->>->>>->>>------>>>- CS
  RF02400    212 UCgGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaG..ugugugaCCCAugc.CAGU..gcaCCucacugcCCuCCCGCuUCCCCGGCC 302   
                 UCGG GUGGAG: GGAGGUG:CAAGUAGC CCGUUGCGGAGAG  U::::G:CCCA  C C GU  G   C:C:: :: CUCCC CUUCCCC GCC
    chr33 115975 UCGGCGUGGAGGAGGAGGUGUCAAGUAGCCCCGUUGCGGAGAGcgUACCAGCCCCAAUCgCCGUacGUCUCGCUG-GUGCUCCC-CUUCCCCCGCC 115882
                 *******************************************99889999977665555888855555668888.999***98.88888888*** PP

                            v                                  v                v             v  v        v       NC
                 >>>>>>>,,,,<<___.._______________________....>>,,,,,,,,,,,,)))))))))-))--))--))))),,,,<<<<-<<___ CS
  RF02400    303 aCuuGgCACUCacuaC..CCCCUCCCCUUCCCUUCUCCcCc....guacccccCuCUCUCuCuuuCuCGCaucCuCUGCCCuCuCACCGgCGCGcc 392   
                 ACUUG:CACUCACUAC  CCCC CCCCUUCCCUUCUCCCCC    G  CC C+CUCUCUCUCU :CUCGCA CCUCU C  UCUCAC   C:CGCC
    chr33 115881 ACUUGACACUCACUACuaCCCCCCCCCUUCCCUUCUCCCCCcccuG-CCCGCUCUCUCUCUCUCUCUCGCACCCUCUACUGUCUCACUGUCACGCC 115787
                 **********98876622677888999**********996567655.566679******************************************* PP

                           v      v v      v  v       vvv    v               v                  v NC
                 ____...>>->>>>]]]]]].]]]]-]]]]]]]]---]]]-]]]]]-]]]],,,,}}}}-<<<<<____~~~~~~>>>>> CS
  RF02400    393 GGGC...GCAcCGGCGCuCu.uuuCCguccuGauUUugCGuguCCCAaCaCACAGccGGAuCGuuUUUC*[ 8]*aaCGa 470   
                 GGGC   G:A   GCGC C  UUUC  UC U :UU     U::C C AC:C   GC::G  CGUUUUU       AACG 
    chr33 115786 GGGCggcGUAUUGGCGCCCCgUUUCUUUCGUUGUU-----UGCCCC-ACGC--GGCGCGGCCGUUUUUG*[20]*AACGA 115701
                 9864333*********9765278887666555554.....599977.****..57**********9985...8..***** PP

>>

RNAfold
>chr33_4
CGGUUCGUUAAAAAGAGAGAGAGGGACGGCAAAAACGGCCGCGCCGCGUG
GGGCAAACAACGAAAGAAACGGGGCGCCAAUACGCCGCCCGGCGUGACAG
UGAGACAGUAGAGGGUGCGAGAGAGAGAGAGAGAGCGGGCAGGGGGGGGA
GAAGGGAAGGGGGGGGGUAGUAGUGAGUGUCAAGUGGCGGGGGAAGGGGA
GCACCAGCGAGACGUACGGCGAUUGGGGCUGGUACGCUCUCCGCAACGGG
GCUACUUGACACCUCCUCCUCCACGCCGAGCCCUAAUUCGCUCUCCUUCA
GUCCUCGCUCAGCCGCACGCCAGGAUGCAGCACCGCACGCGAAAUGCGCU
CACGUCGAGCAACGCAGACAGCAGCGCGCUCGGCAGGGCCCCCAGUGCGC
CGCGCUGCCGCACCGGCUCAGUCCACCUGCUCCAUGCUGGAGGUGCCGGC
GGUGACCUCCGCGGGGGCU
...................((..(((((((.....((((.((((.(((((((((................(.((((......)))).)((((((((....((((.((.(....).))((((.((..(((.(((((((((.((((...((.....(((.((((((((...........(((((((((((...(...(((((((((((((..(((((...))).))...))))))..)))))))....)...))))))))))))))))))))))...))...))))..))))))))).)))..))))))))))....)))))).)).(((......)))(((.....))).....(((((((..(((........))).)))))))...)))))....)))).)))).)))).....)))..))))..))(((((.(((.(((((((((...))).)))))))))))))). (-203.60)

Length sequence

: 469

Length match:

458