chr33_42

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

66.1

E-value:

2.3e-13

From sequence:

106070

To sequence:

106141

Alignments:

                      v                                                           v       NC
                 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71    
                 GG :: :UAGCUCAGUGGUAGAGCG:C:G:+UU  A :C:G:AGG C :GGGUUC+AA CCC: : :: CCA
    chr33 106070 GGGCGUGUAGCUCAGUGGUAGAGCGCCUGUUUUGCAUACAGGAGGcCUAGGGUUCAAACCCCUACUCGUCCA 106141
                 ************************************************************************ PP

>>

RNAfold
>chr33_42
GGCGUGUAGCUCAGUGGUAGAGCGCCUGUUUUGCAUACAGGAGGCCUAGG
GUUCAAACCCCUACUCGUCCA
((((.(((((((.((((((((((....))))))).)))..))).....((((....)))))))).)))).. (-22.80)

Length sequence

: 71

Length match:

70