chr33_43

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

67.1

E-value:

1.2e-13

From sequence:

559895

To sequence:

559823

Alignments:

                                                                                           NC
                 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgU.GGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71    
                 G:A :: UAGCUCAGU GGUAGAGCG:::G:CU ++AA:C:::+GG CG:GGGUUCGA  CCC:C :: U:C+
    chr33 559895 GCAUUCCUAGCUCAGUcGGUAGAGCGCACGGCUCUUAACCGUGUGGuCGUGGGUUCGAUCCCCACGGAGUGCG 559823
                 ************************************************************************* PP

>>

RNAfold
>chr33_43
GCACUCCGUGGGGAUCGAACCCACGACCACACGGUUAAGAGCCGUGCGCU
CUACCGACUGAGCUAGGAAUGC
(((.((((((((.......))))).....(((((((...))))))).((((........))))..))).))) (-27.10)

Length sequence

: 72

Length match:

71