chr33_5

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

134.8

E-value:

8.2e-39

From sequence:

119724

To sequence:

119266

Alignments:

                           v      v                         v  v    v           v   v  v                 vvv      NC
                 :{{{{,,,(((...-(((-((((,,<<<<-~~~~~~>>>>,,<<<<<-<<-<<<<.____>>>>>>->>>>><<<<<<<<<----<<<<<<<<<-- CS
  RF02400      1 GCCggUAcGGC...AGCgcGCaCAcGCgCA*[28]*GcGCAuGCcGCaccccGCa.AAGCuGCgggCGCgGCGCuCuGggGgCCUuGccCCgCGCA 114   
                  C::G A GG     GC  GCAC  :::CA      G:::  G :G AC:  GC:   GC:GC :GC C: CGC:CUGG  GCC UGC   GCGC 
    chr33 119724 CCGCGGA-GGUcacUGCCGGCAC--CUCCA*[ 4]*GGAGCAGGUGGACUGAGCCgGUGCGGC-AGCGCGGCGCACUGGGGGCCCUGCCGAGCGCG 119635
                 *****99.66655569999****..99987...8..899999999999999999844798999.9******************************* PP

                     v        v         v vv                  v   v         v   vvv    v  v      v v          v   NC
                 --<<<________>>>---->>>>->>>>>>>>>>->>>>,)))))))-))),,[[[[[[[[[[[[[[[[[[[[-[[[[-[[[[[[,,,,,,(((( CS
  RF02400    115 CUGCuCUUuaCAUaGCCCGACGuGAGggCaCcuCgCGgGCAGuGCuGCGGCCUCGuGuGGGauCGcguCaggacUGaagGaGaGCGAAuCuCaGGG 210   
                 CUGC  U U+C U GC CGACGU A  GCA  UCGCG:GC GUGC GC  CCU G:GUG G::+G+G: A GA UGAAGG G GCGAAU   A  G
    chr33 119634 CUGCUGUCUGCGUUGCUCGACGUGAGCGCAUUUCGCGUGCGGUGCUGCAUCCUGGCGUGCGGCUGAGCGAGGACUGAAGGAGAGCGAAUU--AGGG 119541
                 *************************************************9*************************************987..779* PP

                 v            v                v      v                   vv         vv               v       v   NC
                 (--((--(((((((((((,,<<<<<<<-<<<-----<<<--<<<..-<<<<<<----<<<.____..>>>-->>>>->>->>>->>>------>>> CS
  RF02400    211 CUCgGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaG..ugugugaCCCAugc.CAGU..gcaCCucacugcCCuCCCGCuUCCCCGGC 301   
                  UCGG GUGGAG: GGAGGUG:CAAGUAGC CCGUUGCGGAGAG  U::::G:CCCA  C C GU  G   C:C:: :: CUCCC CUUCCCC GC
    chr33 119540 CUCGGCGUGGAGGAGGAGGUGUCAAGUAGCCCCGUUGCGGAGAGcgUACCAGCCCCAAUCgCCGUacGUCUCGCUG-GUGCUCCC-CUUCCCCCGC 119447
                 ********************************************99889999977665555888855555668888.999***98.88888888** PP

                             v                               v                 v             v  v        v        NC
                 ->>>>>>>,,,,<<__________________________...>>,,.,,,,,,,,,,)))))))))-))--))--))))),,,,<<<<-<<____ CS
  RF02400    302 CaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCcCc...guac.ccccCuCUCUCuCuuuCuCGCaucCuCUGCCCuCuCACCGgCGCGccG 393   
                 CACUUG:CACUC CUAC  CC CCCCUUCCCUUCUCCCCC   G  C C+C+CUCUCUCUCU :CUCGCA CCUCU C  UCUCAC   C:CGCCG
    chr33 119446 CACUUGACACUCACUACUACCCCCCCUUCCCUUCUCCCCCccuGCCCgCUCUCUCUCUCUCUCUCUCGCACCCUCUACUGUCUCACUGUCACGCCG 119351
                 *************************************96667755442457899999**************************************9 PP

                          v      v v      v  v       vvv    v               v                  v NC
                 ___...>>->>>>]]]]]].]]]]-]]]]]]]]---]]]-]]]]]-]]]],,,,}}}}-<<<<<____~~~~~~>>>>> CS
  RF02400    394 GGC...GCAcCGGCGCuCu.uuuCCguccuGauUUugCGuguCCCAaCaCACAGccGGAuCGuuUUUC*[ 8]*aaCGa 470   
                 GGC   G:A   GCGC C  UUUC  UC U :UU     U::C C AC:C   GC::G  CGUUUUU       AACG 
    chr33 119350 GGCggcGUAUUGGCGCCCCgUUUCUUUCGUUGUU-----UGCCCC-ACGCG--GCGCGGCCGUUUUUG*[20]*AACGA 119266
                 864333*********9765278887666555554.....599977.****5..6**********9985...8..***** PP

>>

RNAfold
>chr33_5
GCGGUUCGUUAAAAAGAGAGAGAGGGACGGCAAAAACGGCCGCGCCGCGU
GGGGCAAACAACGAAAGAAACGGGGCGCCAAUACGCCGCCCGGCGUGACA
GUGAGACAGUAGAGGGUGCGAGAGAGAGAGAGAGAGAGCGGGCAGGGGGG
GAGAAGGGAAGGGGGGGUAGUAGUGAGUGUCAAGUGGCGGGGGAAGGGGA
GCACCAGCGAGACGUACGGCGAUUGGGGCUGGUACGCUCUCCGCAACGGG
GCUACUUGACACCUCCUCCUCCACGCCGAGCCCUAAUUCGCUCUCCUUCA
GUCCUCGCUCAGCCGCACGCCAGGAUGCAGCACCGCACGCGAAAUGCGCU
CACGUCGAGCAACGCAGACAGCAGCGCGCUCGGCAGGGCCCCCAGUGCGC
CGCGCUGCCGCACCGGCUCAGUCCACCUGCUCCAUGCUGGAGGUGCCGGC
AGUGACCUCCGCGGGGGCUG
...............((..(((.((..(((((....((((...))))(((((.(((...............((((.(((..((((((....))))))...(((((.(.(((..(.(((((.(((.((..(((.(((((((((.((((..((.....(((.(((((((.........((((((((((((...(...(((((((((((((..(((((...))).))...))))))..)))))))....)...))))))))))))))))))))))...))...))))..))))))))).)))..)))))(((((.((........)).)).)))..))))).)....)))))))))(((((((..(((........))).)))))))..)))))))..))).))))).)))))..))..)))..)).....(((((.(((.((((((..(....)..)))))))))))))).. (-202.90)

Length sequence

: 470

Length match:

457