chr33_6

cmsearch-Rfam

Family :

MIR1122

Id:

RF00906

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00906

Description:

not description

Score:

34.7

E-value:

0.00051

From sequence:

430452

To sequence:

430575

Alignments:

                      v v  vvvvvv  v  v        v                                                                  NC
                 ::::<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------<<<<<<<<<<<<___________>>>>>>>>>>>>----------- CS
  RF00906      1 uaaaUACUCCCUCCGUCCggaAaugcuUGUcuuaaAuuUGuauAaAuauGgAuGuaUcuAgacaUauuuUAGUucUagAuaCaUcCauaUUUAuaC 96    
                  +++U C CC      C: G: :::::: : ::A A +  UAUA AUAU :AU:UAU:UA:A+AUA       U:UA:AUA:AU: AUAU UAUA 
    chr33 430452 CUUGUGCUCCCCG--CCGCGUGUGCGCGCGCACACACACAUAUAUAUAUAUAUAUAUAUAUAUAUA-------UAUAUAUAUAUAUAUAUAUAUAU 430538
                 *****99988655..455555555555555555555555555554444444444444444443332.......55555555555555555566666 PP

                         v        v  v  vvvvvv  v v      NC
                 ------>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:::: CS
  RF00906     97 AaaUuuaagACAagcauUuccGGACGGAGGGAGUAuauu 135   
                 A+ U  :: : :::::: :C :G CG   GG G A+ + 
    chr33 430539 AUGUACGUACGCGCGCAGACACGACG--CGGUGAACCAA 430575
                 66666666655555555555555555..57778899*** PP

>>

RNAfold
>chr33_6
UCCCCCUUGUGCUCCCCGCCGCGUGUGCGCGCGCACACACACAUAUAUAU
AUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUACGU
ACGCGCGCAGACACGACGCGGUGAACCAAAGGGGC
.((((.(((.(.((.((((..(((((..((((((..((..((((((((((((((((((((((((((....))))))))))))))))))))))))))..))..))))))..)))))..)))).)).)))).)))). (-68.60)

Length sequence

: 135

Length match:

122