chr33_7

cmsearch-Rfam

Family :

MIR1122

Id:

RF00906

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00906

Description:

not description

Score:

40.1

E-value:

2e-05

From sequence:

430577

To sequence:

430452

Alignments:

                     v    v vv        v                                                                           NC
                 ::::<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------<<<<<<<<<<<<___________>>>>>>>>>>>>----------- CS
  RF00906      1 uaaaUACUCCCUCCGUCCggaAaugcuUGUcuuaaAuuUGuauAaAuauGgAuGuaUcuAgacaUauuuUAGUucUagAuaCaUcCauaUUUAuaC 96    
                  ++  : UC C  CG C: G: :::::: : ::  A +U UAUA AUAU :AU:UAU:UA:A+AUA       U:UA:AUA:AU: AUAU UAUA 
    chr33 430577 CUUUGGUUCACCGCGUCGUGUCUGCGCGCGUACGUACAUAUAUAUAUAUAUAUAUAUAUAUAUAUA-------UAUAUAUAUAUAUAUAUAUAUAU 430489
                 ***************999999999999999999988888888877777666666666666665543.......66666666666666777777777 PP

                                  v        vv v    v     NC
                 ------>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:::: CS
  RF00906     97 AaaUuuaagACAagcauUuccGGACGGAGGGAGUAuauu 135   
                  + U U:: : :::::: :C :G CG  G GA : +A+ 
    chr33 430488 GUGUGUGUGCGCGCGCACACGCGGCG--GGGAGCACAAG 430452
                 77788888888888888888888666..678******** PP

>>

RNAfold
>chr33_7
CCCCCUUGUGCUCCCCGCCGCGUGUGCGCGCGCACACACACAUAUAUAUA
UAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUACGUA
CGCGCGCAGACACGACGCGGUGAACCAAAGGGGCA
.((((((....((.((((..(((((..((((((..((..((((((((((((((((((((((((((....))))))))))))))))))))))))))..))..))))))..)))))..)))).))....)))))).. (-68.50)

Length sequence

: 135

Length match:

124