chr33_8

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

30.2

E-value:

0.0029

From sequence:

619895

To sequence:

619804

Alignments:

                   v                                                                                              NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<.<<<____________>>>->>>>>>>>>>->->>>>>>>>>>>>>>>>>>--->> CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCaCACCucaCuaaCa.CuaAccaCaGAUuuauaGAuGuuaGuaGGCGUuGuGggaaGggcgGcgacgauGa 95    
                    :::C  ::::CC:C:C:::U::::C C   AC::ACA :UA ++  A AU+U UA:AUGU::GU  GCGU::::G:::G:G:GG::::G  G:
    chr33 619895 GAGACAC--ACACCCACACACAUACACC-C---ACAUACAuAUAUAUGUAUAUGUGUAUAUGUAUGU--GCGUGUGUGUGUGUGUGGGUGUGG-GU 619809
                 *****99..9999999999999988888.6...7888888789999999999999999888888888..789988889999999999999988.99 PP

                   v   NC
                 >>>:: CS
  RF01064     96 acgua 100   
                 :: U 
    chr33 619808 GUAUG 619804
                 ***** PP

>>

RNAfold
>chr33_8
ACGCAUACACCCACACCCACACACACACACACGCACAUACAUAUACACAU
AUACAUAUAUAUGUAUGUGGGUGUAUGUGUGUGGGUGUGUGUCUCUGUC
..(((...((.((((((((((((((...((((.((((((((((((............)))))))))))).)))).)))))))))))))).))...))). (-49.50)

Length sequence

: 99

Length match:

90