chr35_1

cmsearch-Rfam

Family :

mir-24

Id:

RF00178

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035195 gene silencing by miRNARF00178

Description:

This family represents the microRNA (miRNA) mir-24 family. miRNAs are transcribed as ~70nt precursors (modelled here)
and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case
the mature sequence comes from the 3' arm of the precursor. The extents of the
hairpin precursors are not generally known and are estimated based on hairpin prediction. The products
are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in
miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based
on the sequence of the mature RNA. miR-24 has been identified in human and mouse
[1].

Score:

29.6

E-value:

0.00043

From sequence:

593017

To sequence:

592927

Alignments:

                                                      NC
                 <<<<----<<<-<<<~~~~~~>>>->>>---->>>> CS
  RF00178      1 CUCCuGUGCCUACUG*[38]*CAGCAGGAACAGGAG 68    
                 CU:CUGUGCCUAC:G      C:GCAGGAACAG:AG
    chr35 593017 CUUCUGUGCCUACCG*[61]*CGGCAGGAACAGGAG 592927
                 **************9...*..9************** PP

RNAfold
>chr35_1
UCCUGUUCCUGCCGGGACAUGGUGUCUGAGGAAUACGUGAAUGCUGACUG
GAAAGUAAAGUUAGGGUUGUGGUAGCGGUAGGCACAGAAG
..((((.((((((((((((...)))))......(((...(((.((((((.........)))))).)))...))).))))))).))))... (-29.90)

Length sequence

: 90

Length match:

89