chr35_10

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

26.1

E-value:

0.0024

From sequence:

810226

To sequence:

810445

Alignments:

                                                          v                                                       NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_____________.................................... CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAau.................................... 60    
                 A++  G  AUG GA+ : GA AGGGA  AG: AGAG  :G  A G::G U  C ACAA+                                     
    chr35 810226 AGAAUGCAAUGGGAG-AGGAGAGGGAG-AGAGAGAGAGAG--AGGAGGUUUGCGACAAGCaacgcucagacauaccugucagcauacacacacaca 810317
                 ***********8888.*********86.666666555444..446778888888887777999999999999999999999999999999999999 PP

                                                                                                            v     NC
                 .........................................................____________________________>>---->>>>> CS
  RF00690     61 .........................................................ugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCCaUG 99    
                                                                           +UGAG +      G     GUU+UU C::C U CC:  
    chr35 810318 cacacacacacccagacccacagcugcucaaagaaaagcaaagaaacaaaaaugugcACUGAGUGU----CGUGCGCGUUUUU-CUUCAUUCCUUU 810408
                 999999999999999999999999999998888888888888877777777765555555555444....3445555555554.455557779*** PP

                                                       NC
                 >->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690    100 CACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 C CU :CUC UCCCU  C : U U+ C+C+U+ +U  
    chr35 810409 CCCUCCCUCUUCCCUUUCUUGUGUUGCACUUUCCUCA 810445
                 ************************************* PP

>>

RNAfold
>chr35_10
GAAUGCAAUGGGAGAGGAGAGGGAGAGAGAGAGAGAGAGGAGGUUUGCGA
CAAGCAACGCUCAGACAUACCUGUCAGCAUACACACACACACACACACAC
ACCCAGACCCACAGCUGCUCAAAGAAAAGCAAAGAAACAAAAAUGUGCAC
UGAGUGUCGUGCGCGUUUUUCUUCAUUCCUUUCCCUCCCUCUUCCCUUUC
UUGUGUUGCACUUUCCUCA
...((((((((((((((((((((((.(((((.(((.((((((((((((.....)))..(((..((((....)))))))...........................))))......((((........))))........(((((((((((........)))))))))))))))).)))))))).))))))))..))))))))..))))))......... (-68.30)

Length sequence

: 219

Length match:

218