chr35_12

cmsearch-Rfam

Family :

mir-558

Id:

RF01021

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01021

Description:

not description

Score:

32.1

E-value:

0.0011

From sequence:

1386618

To sequence:

1386700

Alignments:

                                      v                 vv                     vv                v               NC
                  ::::::::<<-<<<-<<<<<<-<<<<<<<<<<<<<<<<<<--<<--<<<___>>>-->>-->>>>>>>>>>>>>>>>>>>>>>.>>->>>->>: CS
  RF01021       1 gUGUGUGUGcGcguguGuGguUauuuuGGuacaGcaGCuCUAGaCUCuaUUAuaGUUuCCUGaGCugCuguaCCaaaauacCa.CaAacgGgCU 93     
                  GUGUGUGUG:G:G G GUG: U:U:U: G::::G::G         :U: U :A:UU    +  C::C::::C :A:A: :CA C   C: :C 
    chr35 1386618 GUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGUGGGUGU--------GUGGUGCACUU----UGGCACCCACGCGCACACAACAgCGUGCAUGCA 1386699
                  ******************9999****99*****99995........66666677766....56899999****99****99988********** PP

                    NC
                  : CS
  RF01021      94 G 94     
                   
    chr35 1386700 A 1386700
                  * PP

>>

RNAfold
>chr35_12
AUCAUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGUGGGUGUGUGGUGC
ACUUUGGCACCCACGCGCACACAACAGCGUGCAUGCAACCGCUC
.....(((.((.(((((((((((...((((((((((((((((((((...)))....)))))))))))))))))...)))))))))))))))).. (-47.30)

Length sequence

: 94

Length match:

81