chr35_14

cmsearch-Rfam

Family :

SCARNA2

Id:

RF01268

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01268

Description:

not description

Score:

23.4

E-value:

0.0084

From sequence:

663717

To sequence:

663810

Alignments:

                      v     v                                        v    v     v            v     v    v         NC
                 <<<<<<_____>>>>>>,,,,,,,,,,,,,,,,<-<<<<____>>>>->,,<<<--<<<<<-<<____________>>->>>>>-->>>,,,,,,, CS
  RF01268     57 cgcGcGgAAGGCgCguguagggcgagUGuGaGUgggcgcGuGagcgcGuGaGuguGcgcgcgcgGaGCgUGcaAGgcgAgcgcgUGcgCCCgCCCc 152   
                 :GCG:  AAGG :CGU:U G GCG GUG G+GU  G:G:GUG+:C:CG  +  :UGC :GC+: GAG GU   A   : GC: GUG:   CGCCC 
    chr35 663717 UGCGUCCAAGGUGCGUGUUGUGCGUGUGCGUGU--GUGUGUGUGCGCG-CUUCUUGCCUGCUUUGAGUGUUGGACUUGUGCAUGUGAAAUCGCCCU 663809
                 ******************999999888888777..7777777777777.455789***************************************** PP

                   NC
                 , CS
  RF01268    153 U 153   
                 U
    chr35 663810 U 663810
                 * PP

RNAfold
>chr35_14
UCUGUUGUAGCAUGUUUCGAUCGGCAGUGUUCAAUUGUAGUCGUUGUCGC
ACUCUUUUACACCCCUCUUUGCUUUUUUCUGCCGGCGAAAUAAGUUGUCU
CGGUUCUUUCUUUCUUUCCAGUGCCCAUUGCACACUGUUUUGGUGGUUGC
AUGCACGUGCGUGUGCGUCCAAGGUGCGUGUUGUGCGUGUGCGUGUGUGU
GUGUGCGCGCUUCUUGCCUGCUUUGAGUGUUGGACUUGUGCAUGUGAAAU
CGCCCUUUCUAUCCCUUUGGAGCACCUUUCCACCCAACUUUUGUGUUCUC
GGUGAGUCCUGGAUAAGCACCGUUUUGCUCUCGUCUUCUUUAGCUUGCGU
CACCCUGUGAGGUGGUUGCGCCUCCCUUUUUUCUAUCCUCACCUACAUCU
UCCUUGGCUGCCCCCCUUCUU
.(((...((((.(((((((.((((((((((..((..(.(((((....)).))))..)))))).................))))))))))))).))))...))).................(((((((..(...........(((((((((((((((((.((...(((.((((((((((.(..(((((((((((......)))))))))))..).)))..)))))).)))))).))..))))))))..)))))))..........)..))).)))).....((.((((.....((((....((((((....((((.((((......))))...))))..........((((.(((((....)).))).))))................)))))).)))).....)))).))........... (-100.70)

Length sequence

: 421

Length match:

92