chr35_15

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

25.2

E-value:

0.0056

From sequence:

1660115

To sequence:

1660250

Alignments:

                                                                                                                 NC
                  <<<<------------------------------------------------------------------------------------------ CS
  RF01295       1 UGGAAAUGAUGAAAUAGAGAUAAUUGGGUGUUGAAUGUUGUaUGAuUGGAAauUUUuAAUAugUAugUUAAgUAAUucuuauAAgUUuAaugUU 94     
                  U:::A  GA GA A AGAGA A  UG G          UGU+U         U  U AAUAU+UAUGU  A   AU + UAUA GU UA    U
    chr35 1660115 UAUGAGAGA-GAGAGAGAGACAGCUGUGCC--------UGUGU---------UCAUCAAUAUAUAUGUAUAU--AUGUAUAUAUGUAUAC--AU 1660186
                  ****98887.78888888888877764432........22222.........23334444444443322221..1112222222222221..22 PP

                                                                               NC
                  ------------------------------------------------~~~~~~~>>>>: CS
  RF01295      95 UuaUaGauacuUaauAGaGuGUGUGUGUGugUGUGUGUGUgcuUgUGg*[183]*UCCAA 330    
                   U UA + A+ UA   G+GUGUGUGUGUGUGUGUGUGUGUG+ UGUG        :::A 
    chr35 1660187 AUGUAUGCAUGUACACGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU*[ 11]*CAUAC 1660250
                  222222233333333333333333333333333333333333322222....5..***** PP

RNAfold
>chr35_15
CUUAUUCUUUCUCAGCAUUCUCACCUCAUCGCCCCCGUCGCUCUUUCGCU
UUCUCUGUGGAGUGAAAGAGGCUGAAAGUUAAAUAUUUGAUACUUUUAUG
AGAGAGAGAGAGAGACAGCUGUGCCUGUGUUCAUCAAUAUAUAUGUAUAU
AUGUAUAUAUGUAUACAUAUGUAUGCAUGUACACGUGUGUGUGUGUGUGU
GUGUGUGUGUGUGUGUGUGUGUGUGUGCAUACAUAUGUAUAUAUUUGUAU
GUGUAAUUUUUUAUUUUCAUGGGUUUAUGCCCGCAUGUGUGUGUGUUUGG
GUUUGUGUUUGUGUUUGUGUGUCUACUUU
..............((((...(((..(((.((((......(((((((.(((((((...((((((..(((................)))..))))))...))))))).)))))))((((......))))........(((((((((((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))))))))))((((((((((((((((((....)))))))..............(((((....))))))))))))))))....))))..)))...)))...))))......... (-91.00)

Length sequence

: 329

Length match:

134