chr35_18

cmsearch-Rfam

Family :

TB9Cs3H1

Id:

RF01555

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01555

Description:

not description

Score:

81.3

E-value:

3.3e-16

From sequence:

1240278

To sequence:

1240212

Alignments:

                                                                                       NC
                  :<<<<<<<-------<<<<--<<---<<<__________>>>->>--->>>>------>>>>>>>::: CS
  RF01555       1 AGCAcgAUUaAACACGGAuccaCcuuggcaUAcuUuaGUgccgGuGuuaUCCGCCAGUGUcgUGCaAG 68     
                   GCA::AUUAAACACGGAUC AC+ UG:C UACUU+AGUG:C GUG  AUCCGCCAGUGU::UGCAAG
    chr35 1240278 CGCAGAAUUAAACACGGAUCAACU-UGACCUACUUCAGUGUCAGUGGAAUCCGCCAGUGUUUUGCAAG 1240212
                  ************************.******************************************* PP

>>

RNAfold
>chr35_18
CUUGCAAAACACUGGCGGAUUCCACUGACACUGAAGUAGGUCAAGUUGAU
CCGUGUUUAAUUCUGCGG
.(((((........(((((((..((((((.(((...)))))).))).))))))).........))))) (-16.30)

Length sequence

: 68

Length match:

65