chr35_2

cmsearch-Rfam

Family :

mir-280

Id:

RF00801

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00801

Description:

not description

Score:

28.9

E-value:

0.0034

From sequence:

355999

To sequence:

356088

Alignments:

                          vv  v             v         v        v           v               v  vv                  NC
                 :<<<<<<<-<<<<<-<<<-<<<<<<<<<<<<<<<<-<<<<___.>>>>--->>>>>>>>>>>>>>>>>>>-...>>>>>---->>>>>>>:::::: CS
  RF00801      1 UgGcccucAuGcauUuaCGuuGCauaugaaaugauAuuuaUAG.uaaaCAGauuauuuuauauGCagGuaU...augCaaguggagggCcuGuaca 92    
                  :::C:U:  G    :AC :::CA AU :A:::AUAU UAUA  UA A AGAU:::U: AU UG:::GU:U         G G:A:G:::U + C 
    chr35 355999 AAAACAUG-CG----CACCACACAUAUAUAUAUAUAUUUAUAUuUAUAUAGAUAUAUAGAUGUGUGUGUGUgugG----UGCGCAUGUUUUCCUCU 356085
                 ********.44....555566777777777777777777776428889999999999999999999988883333....4555************* PP

                     NC
                 ::: CS
  RF00801     93 uug 95    
                 UUG
    chr35 356086 UUG 356088
                 *** PP

RNAfold
>chr35_2
GCAAAACAUGCGCACCACACAUAUAUAUAUAUAUUUAUAUUUAUAUAGAU
AUAUAGAUGUGUGUGUGUGUGGUGCGCAUGUUUUCCUCUUUGCGA
(((((((((((((((((((((((((((((((((((((((....)))))))))))....))))))))))))))))))))))).......))))).. (-48.00)

Length sequence

: 95

Length match:

88