chr35_20

cmsearch-Rfam

Family :

TB9Cs4H2

Id:

RF01558

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01558

Description:

not description

Score:

84.9

E-value:

4.5e-16

From sequence:

1588669

To sequence:

1588741

Alignments:

                                                                                             NC
                  :<<<<<<------<<<-<<<<<<<_________.._____>>>>>>>--.>>>-------->>>>>>::::::: CS
  RF01558       1 aGgCCCgCCAGCUACCACGcggAGUGUAUACuC..UCagUCUccgCGgu.GGUCGUUcUACcGGGcCAAGAuGC 71     
                  +G:CCC:CCAGCUACCACGCG:AGUGUAUAC+C  UCAGUCU:CGCGG  GGUCGUU+U C:GGG:CAAGAUGC
    chr35 1588669 CGUCCCACCAGCUACCACGCGGAGUGUAUACCCcuUCAGUCUUCGCGGGcGGUCGUUUU-CUGGGCCAAGAUGC 1588741
                  ************************************************99*********.************** PP

RNAfold
>chr35_20
GUCCCACCAGCUACCACGCGGAGUGUAUACCCCUUCAGUCUUCGCGGGCG
GUCGUUUUCUGGGCCAAGAUGC
..((((..(((.(((.(((((((................)))))))...))).)))...))))......... (-18.90)

Length sequence

: 72

Length match:

71