cmsearch-Rfam

Family :

Id:

Type:

Taxonomy:

Ontology:

Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                  :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
  RF02198      22 acUGCGgCUGCGCgGcccGcugGagcGCGuGcGgCUUCUACUGCGGCUGCGCaaaCUCGGCGCGCGcaCGcucGucugcuugCgggGGCUCCUC 115    
                   c  C  CUGC C G  cGcug ag G GuG G  U C ACUGCGGCUGCG  a     G  CGC     ++cG  u     Cg  G CUCC C
    chr35 1349417 UCAUCCCCUGCACAGGACGCUGCAGGGAGUGAGCGUGCGACUGCGGCUGCGUCACAGGCGGCCGCC----UCCGAUUUGAGCCGUUGUCUCCGC 1349328
                  33446779999****************************************766554444344443....4556666777788999******** PP

                  :::::::::::::::: CS
  RF02198     116 CCucCaGccuaGgUCc 131    
                  CC   aG c+ GgUC+
    chr35 1349327 CCCGUAGACGCGGUCU 1349312
                  ***9999999998764 PP



Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)
--------------------------------------------------------------------------------------
Query model(s):                                          1  (162 consensus positions)
Target sequences:                                       34  (57702516 residues searched)
Windows passing local HMM SSV      filter:           32470  (0.176); expected (0.02)
Windows passing local HMM MSV bias filter:            9829  (0.05363); expected (0.02)
Windows passing local HMM Viterbi  filter:             890  (0.00508); expected (0.001)
Windows passing local HMM Forward  filter:             348  (0.002229); expected (1e-05)
Total HMM hits reported:                                 1  (1.837e-06)

# CPU time: 3.78u 0.01s 00:00:03.78 Elapsed: 00:00:00.91
//

RNAfold

Length sequence

Length match: