chr35_9

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

26.5

E-value:

0.0019

From sequence:

553744

To sequence:

553674

Alignments:

                                     vv                               vv                      NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-~~~~~~>>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGa*[66]*CUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 A++ G  G+ GAGA++G     GGGA:GAGGCAG+      CUGCCUC:UCCC     CCU  C+CUC++CU UU 
    chr35 553744 AGAGGACGUGGAGAGAG---GAGGGAGGAGGCAGU*[ 8]*CUGCCUCCUCCCC----CCUCCCCCUCUCCUGUUA 553674
                 *********99999866...46************5...9..***********94....466678888889999999 PP

>>

RNAfold
>chr35_9
ACUCGCGUACGCGGGCGUUUCCGACGACGACGUAACAGGAGAGGGGGAGG
GGGGAGGAGGCAGCAAGUGUGACUGCCUCCUCCCUCCUCUCUCCACGUCC
UCUGUCUCACCCCUGCACCAUAAUCGCCGCUAAUUU
....(((...(((((.((....(((((.(((((....(((((....(((((((((((((((((((....)).))))))))))))))))))))))))))).)).)))..)).)))))........)))......... (-62.70)

Length sequence

: 136

Length match:

69