Alignments: v vvvvvvvv vvvv v v v v v v NC
{{{{{-{{{-{{{{{{{,[[[[[[[[-[[[[,,,<<<-<<<<<.______>>>>>>>>,,,,,,(((((((,,,,,,<<<__________>>>, CS
RF01412 1 uacaauaagauuuGcucACuCaaGGGaGucuuGCuCAUCcCCu.auuGAAaGGgGUGaUGcuAUGacagcaUuUgAAgCauUuauguUaAuGcU 93
:::: ::: ::: C :A++++AG++A++++ G : CCC: A+ AA:GGG : +++A GA A:: ++ AA:C:UUU+U UU+ : :U
chr36 1584751 UCUCCCCCCCCCCCCAUAAAAUAGAAAAAAAAGUGGGGGCCCCaAAAAAAGGGGCCCAAAAAAAGAUAAAGAACCAAACUUUUUUUUUUUU-UU 1584659
*****************99999999987777888888788888666677788888888888899999999999999999999998888886.66 PP
v v v v vvvv vvvvvvvv v v NC
,,,,,,,<<<<___________>>>>,))))))),,,,,,,,,,,,,,,,,,]]]]--]]]]]]]],,,,,,,,,<<<_______________> CS
RF01412 94 uauuuUUgGcgugUUuAUucaUcgCcaugcuguCauuuaAuAuaaAAAAAAUagaCCaCCCuuGaGuUugggaAucggAGGGauaGGUCUAUuc 187
U UUUUU: :U+UU A + A : :+ ::U UC U AA A+AAAAAAAA + +AAU : GGG GGU U UU+
chr36 1584658 UUUUUUUUUUUUUUUAAAAAAGAUGAUAUUUUUCCCUCAAGAAAAAAAAAAA--------------AC-AAAAAUGG-GGGGGGGGGUUUUUUU 1584581
6666666666666666666565666666677777777777777755555555..............33.33333333.5888888999999999 PP
v vv vv NC
>>,,,,,,,,,,...........}}}}}}<<<<_______>>>>}-}}}-}}}}}-----<<<<<<<<<<___>>>>>>>>>> CS
RF01412 188 cguuUcuAaAuC...........gagCaagccCcUUGuauGggcaacuuUuuguaCAgAgCcgggGuGcuAcCagCaCcccgG 259
: UUUCUAAA+ : G :::CCC+ U A+GGG::+::: :::: :GGGG:: ACC ::CCCC:
chr36 1584580 UUUUUCUAAAAUgugaagaaaagGAGGGGCCCCUCUC-AAGGGGGGGGGGGGGGGUUUUUGGGGGGAACCACCCUUUCCCCCC 1584499
9999999999999*********999********9998.88888888888899999999************************* PP
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