chr36_10

cmsearch-Rfam

Family :

mir-301

Id:

RF02061

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

Not found

Description:

not description

Score:

34.4

E-value:

0.00019

From sequence:

1520414

To sequence:

1520314

Alignments:

                    vv                                                                       vv     NC
                  :<<<--<<<<<<<<-<<<<---<<<<<<<<---~~~~~~------>>>>>>>>------>>>>->>>>>>>>--.>>>::: CS
  RF02061       1 UgcugaCaGguGCUCUGACuuuaUUGCACUACU*[10]*acuAGCAGUGCAAuAgUAUUGUCAAAGCacCuGag.agcAGc 84     
                   :   +CA:GUGCUCU :C +U:::GCAC:ACU         AG :GUGC:::   AUUG: A AGCAC:UG+G   :AGC
    chr36 1520414 ACGGCGCACGUGCUCUCCCAAUGCCGCACCACU*[29]*UGCAGUGGUGCGGC---AUUGGGAGAGCACGUGGGaAAGAGC 1520314
                  *********************************...9..5679**********...79*************965389**** PP

>>

RNAfold
>chr36_10
CUCUUUCCCACGUGCUCUCCCAAUGCCGCACCACUGCAAACACCCUCGCG
UGCGUUCGUACGUCUGCAGUGGUGCGGCAUUGGGAGAGCACGUGCGCCGU
........((((((((((((((((((((((((((((((.........((((((....)))))).))))))))))))))))))))))))))))))...... (-71.00)

Length sequence

: 100

Length match:

99