chr36_12

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.1

E-value:

0.0047

From sequence:

1176733

To sequence:

1176806

Alignments:

                                      v                                    v                      NC
                  ::::::::::::::::<<<-<<<<<<<-<<<<<<-<~~~~~~>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690       1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaG*[63]*CACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136    
                  +A  GG G UGAG+++G::A AG:GAA A:G :G+G      C C: C:U UUC:CU G::C ++U+ C+CCUCU+UU 
    chr36 1176733 GAGAGGGGGUGAGUGAGGAAGAGAGAAAAAGGGGUG*[ 2]*CUCCCCUU-UUCUCUGGUCCUCAUUGCACCUCUCUUG 1176806
                  *******************************99876...6..66777766.9*************************** PP

>>

RNAfold
>chr36_12
CUGCACUUAGCGACAGAGGUAUGAAGGACGGAGAGGGGGUGAGUGAGGAA
GAGAGAAAAAGGGGUGUACUCCCCUUUUCUCUGGUCCUCAUUGCACCUCU
CUUGUGCCCUCUUCCCCGCCCCCCCCCCCCGUAGA
.........(((..(((((......(.(((.(((((((...((((((((..((((((((.((((......))))))))))))..))))))))...)))))))))).))))))....)))................ (-52.60)

Length sequence

: 135

Length match:

72