chr36_13

cmsearch-Rfam

Family :

MIR530

Id:

RF01005

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01005

Description:

not description

Score:

32.8

E-value:

0.0028

From sequence:

1344680

To sequence:

1344607

Alignments:

                                                vv                  vv                              NC
                  <<<<<<<<<--<<-<<<<<<<<<<<<<<<<<<<<<<<<~~~~~~>>>>>>>>>>>>>>>>>>>>>>>>->>>>>>>>>>>  CS
  RF01005       1 gCCAAcAUGUUGCCUUuAuCUGCAuuuGCACCUGCAcC*[98]*GgUGCAGGUGCaagUGCAGgUgAAUGCCAUgUUGGu  173    
                  ::C:AC:U    CCUU:::C: :A:UUGCA  U :A:        :U: A  UGCAA:U: :G:::AA G  A:GU:G:: 
    chr36 1344680 GUCCACGU---CCCUUAUUCCCGACUUGCACAUUUAUA*[ 4]*UAUAAAAAUGCAAGUCGGGAAUAAGGG-ACGUGGAC  1344606
                  ********...799****************99988886...6..68888999****************996.********  PP

>>

RNAfold
>chr36_13
CAGGUGCACGUACACACGACGCUGUGCACAUGCGCAAGAGUGUUAUCAGU
CCACGUCCCUUAUUCCCGACUUGCAUUUUUAUAAAUUUAUAAAUGUGCAA
GUCGGGAAUAAGGGACGUGGACGAGGAGCUGAAAGCGAAAGGAGGAGCAU
UUGCACAACAGUGCACCGAGG
..(((((((((...........((((((.((((((...(((....((.((((((((((((((((((((((((((((.((((((....)))))).))))))))))))))))))))))))))))))...)))....))..........)))).)))))))).))))))).... (-86.50)

Length sequence

: 171

Length match:

72