chr36_17

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

37.3

E-value:

0.003

From sequence:

2530337

To sequence:

2530419

Alignments:

                         v                    v                    v                  v          NC
                  <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<<~~~~~~>>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929       1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGuC*[ 5]*GgUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77     
                  CG:GG:CG     GUGUGUG  ::UG:G GUG G::      :: CCAC C:CA::  CACACC     G:CC:CGC 
    chr36 2530337 CGUGGUCG-----GUGUGUGUGUGUGUGUGUGCGUG*[21]*CACCCACCCACACAUGCACACC-----GACCACGCA 2530419
                  ****9985.....56666666666666666665544...8..4566777777777777777776.....899****** PP

>>

RNAfold
>chr36_17
GUGGUCGGUGUGUGUGUGUGUGUGUGCGUGAGUGUCGGUAUAGUGGCGAG
ACACCCACCCACACAUGCACACCGACCACGCA
((((((((((((((((((((.(.(((.(((..(((((......)))))...))).))))))))))))))))))))))))... (-48.40)

Length sequence

: 82

Length match:

81