chr36_18

cmsearch-Rfam

Family :

Phe_leader

Id:

RF01859

Type:

Cis-reg; leader;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0006520 cellular amino acid metabolic process

Description:

not description

Score:

34.5

E-value:

0.0057

From sequence:

1584684

To sequence:

1584582

Alignments:

                                                       v   v            v vv     vv    v                         NC
                  :::::::::::::::((((-((((((((((((((-((((,,<<<<______>>>><<<<___>>>>,,))))-))))))))))))))-))))-  CS
  RF01859       1 aAUgAaacauauacuGuUcUUuUUcGcuUucuuuUUuacuuucCcCUgAuugGgaGgcguUUcguCGUguaAaaaagaAagCgAAaAcgAaCa  93     
                  AA+GAA CA+A+ +U:UU:UUUUU:::UUU:U:UU     U : :  +A  : : G  :UUU:  C U    AA:A:AAA:::AAAAC:AA:A
    chr36 1584684 AAAGAACCAAACUUUUUUUUUUUUUUUUUUUUUUU-----UUUUUUAAAAAAGAUGAUAUUUUUCCCU-C--AAGAAAAAAAAAAAACAAAAA  1584600
                  ********988777766666666666555555555.....4555545554466668888777666655.3..555666677778888888886  PP

                               NC
                  ~~~~~~:::::: CS
  RF01859      94 *[26]*UUUuuU 125    
                        UUUUUU
    chr36 1584599 *[12]*UUUUUU 1584582
                  ...9..****** PP

RNAfold
>chr36_18
UUAGAAAAAAAAAAAACCCCCCCCCCCAUUUUUGUUUUUUUUUUUUCUUG
AGGGAAAAAUAUCAUCUUUUUUAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AGUUUGGUUCUUUAUCUUUUUUUG
..(((((((((((((((................))))))))))))))).(((((((((..((((.(((((((.......................)))))))..))))..))).)))))).... (-17.30)

Length sequence

: 124

Length match:

101