chr36_2

cmsearch-Rfam

Family :

HOXA11-AS1_6

Id:

RF02142

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010629 negative regulation of gene expression

Description:

not description

Score:

20.2

E-value:

0.0054

From sequence:

2114556

To sequence:

2114464

Alignments:

                  :::::::::::::::::::::::::::::::::::::....:::::::::::::::::::::::::::::::::::::::....:::::::::: CS
  RF02142      64 GGAAGAAAAACAAAGGCAGGAAGUGGCgGCgGcCUGA....CGGUGCGUGUGUGUCUgcGgaGAAGGGAGGGAGccguUu....CAaUCUCuuC 149    
                  G AAGAAAAA           AGU G gGCgG  UG     C  UGCGUGUGUGU Ug+G  G  GGG GGGAG    Uu    CA U  C u 
    chr36 2114556 GAAAGAAAAAG----------AGUAGUGGCGGAUUGGgcuuCAUUGCGUGUGUGUGUGUGUGGGGGGGGGGGAGUUUCUUgaccCAUUUACGUU 2114473
                  44455554443..........4555555666655553222256677888887777777777777788888888876555411114444445555 PP

                  ::::::::: CS
  RF02142     150 UUGUUUUuc 158    
                  UU UUUUuc
    chr36 2114472 UUAUUUUUC 2114464
                  555555554 PP

>>

RNAfold
>chr36_2
AGCCAGUGAUGCGUACACUACACAUGAUGAGAGUAACGAAUCGAAAAAUA
AAACGUAAAUGGGUCAAGAAACUCCCCCCCCCCCACACACACACACACGC
AAUGAAGCCCAAUCCGCCACUACUCUUUUUCUUUCGCGAGCUCGUGUGGU
UGUGGCACCAAGAGCUAGUCCUCUGGAG
.(((.((..(((((..........((((..(.....)..)))).........))))).)).)))..................(((((..(((((.(.(((((.((((....................)))).)).))).)...)))))..)))))..(((.(((......)))))).. (-28.90)

Length sequence

: 178

Length match:

91