chr36_27

cmsearch-Rfam

Family :

TB10Cs5H2

Id:

RF01535

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01535

Description:

not description

Score:

59.6

E-value:

1.1e-11

From sequence:

2242427

To sequence:

2242348

Alignments:

                                                                                                   NC
                  :::<<<<<<-------<<<---<_________________._____________>-.--->>>------->>>>>>:::: CS
  RF01535       1 GGAGCcGgCaACGUCUGUguuauGCGcGAgAaCagCuugU.cgCUcUCcUcUGCaC.UUUcACUGUAAaaGcCgGCAAGA 78     
                  GGAGCC ::+ CGUCUGUGUU+:G+GCGAGA  +G UUG  C+CUCUCCU UGC:C UU CACUGUA   :: GGCAAGA
    chr36 2242427 GGAGCCCAUCUCGUCUGUGUUCUGUGCGAGAGAGGUUUGCcCUCUCUCCUGUGCGCuUUACACUGUAUCGAUGGGCAAGA 2242348
                  ************************************999626899***********99********************** PP

RNAfold
>chr36_27
CUUGCCCAUCGAUACAGUGUAAAGCGCACAGGAGAGAGGGCAAACCUCUC
UCGCACAGAACACAGACGAGAUGGGCUCC
...(((((((......((((...(.((....((((((((.....)))))))))).)...))))......)))))))... (-32.20)

Length sequence

: 79

Length match:

78