chr36_28

cmsearch-Rfam

Family :

TB10Cs5H3

Id:

RF01536

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01536

Description:

not description

Score:

37.3

E-value:

8e-05

From sequence:

2243199

To sequence:

2243129

Alignments:

                                   v       v              v        v                      NC
                  :::<<<<<<<-----<<<------<<__________.___>>------->>>------>>>>>>>:::::: CS
  RF01536       1 aAACggcAACUCUCUGGAUuCcUcggGCcauUUuUc.uUcccgGUGcaaUCCUCAUCaGUUgccGaAGAaa 70     
                   AAC::CAACUCU UGG +  +U+G GCCAUUU+U+ +UC C +  CAA CCUC U +GUUG::GA GAA+
    chr36 2243199 CAACUACAACUCUGUGGAACAUUUGAGCCAUUUAUUgCUCCCCAAACAACCCUCCUUGGUUGUCGAUGAAG 2243129
                  ******************************************9999************************* PP

RNAfold
>chr36_28
UUCAUCGACAACCAAGGAGGGUUGUUUGGGGAGCAAUAAAUGGCUCAAAU
GUUCCACAGAGUUGUAGUUG
........(((((......)))))((((.((((((..............)))))).)))).......... (-14.50)

Length sequence

: 70

Length match:

69