chr36_30

cmsearch-Rfam

Family :

TB11Cs3H1

Id:

RF01538

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01538

Description:

not description

Score:

81.4

E-value:

1.6e-17

From sequence:

1566758

To sequence:

1566829

Alignments:

                                               v        v                                  NC
                  ::<<<-<<<----------<<<<<<--<<<<<____>>>>>------->>->>>>------>>>->>>:::: CS
  RF01538       1 AAGGCUCuCAuGAACAAUCCCaCCgGugaguguAuucacucaGUCUCuuGCGuGGACCUAaGaGuGCCaAGA 72     
                    GGCUC:CA+GAACAAUCCC:CC:G :: U:+ ++:A ::++UCUCU:GCG:GGACCUA G:GUGCC AGA
    chr36 1566758 CCGGCUCUCACGAACAAUCCCGCCCGGAGUUUACCAUACUUGAUCUCUUGCGCGGACCUACGGGUGCCCAGA 1566829
                  ************************************************************************ PP

RNAfold
>chr36_30
CGGCUCUCACGAACAAUCCCGCCCGGAGUUUACCAUACUUGAUCUCUUGC
GCGGACCUACGGGUGCCCAGA
.(((.(((........((((((..((((.(((.......))).)))).))).))).....))).))).... (-16.10)

Length sequence

: 71

Length match:

70