chr36_31

cmsearch-Rfam

Family :

TB8Cs2H1

Id:

RF01549

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01549

Description:

not description

Score:

64.1

E-value:

4.2e-12

From sequence:

1083461

To sequence:

1083398

Alignments:

                                    v                       v                        NC
                  :<<<<<<<-----<<<<<<<<<<<__________>>>>>--->>>>>>------>>>>.>>>:::: CS
  RF01549       1 ACCUcCgCUUCGCUCGucgCgcuCucuucuCaGUGagcGuaucgaCGAUGGAUGGuGg.AGGAAGA 65     
                  ACCU:C:CUUCGCUCG:C C:C C+C U UC  UG G:G    G:CGAUGGAUGG:G: AGG+AGA
    chr36 1083461 ACCUGCACUUCGCUCGUCCCGCUCGCGUGUCGAUGGGUG--GUGCCGAUGGAUGGUGUgAGGGAGA 1083398
                  ***************************************..9************************ PP

RNAfold
>chr36_31
UCUCCCUCACACCAUCCAUCGGCACCACCCAUCGACACGCGAGCGGGACG
AGCGAAGUGCAGGUG
.........((((..((.(((......(((.(((.....)))..))).....))).).)..)))) (-12.70)

Length sequence

: 65

Length match:

62