chr36_34

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

63.8

E-value:

9.8e-13

From sequence:

1040097

To sequence:

1040168

Alignments:

                                                                                           NC
                  (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005       1 GgagauaUAGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71     
                  GG: :::UAGCUCA+UGG AGAGCG:CG :CU  +AA: CG:AGG C::GGGUUCGA  CCC::::: :CC 
    chr36 1040097 GGCUGCUUAGCUCAAUGGCAGAGCGCCGUCCUAGUAAGACGGAGGuCAGGGGUUCGAUCCCCCUAGCGGCCU 1040168
                  ************************************************************************ PP

>>

RNAfold
>chr36_34
GCUGCUUAGCUCAAUGGCAGAGCGCCGUCCUAGUAAGACGGAGGUCAGGG
GUUCGAUCCCCCUAGCGGCCU
((((((..((((.......)))).(((((.......)))))......((((......))))..)))))).. (-26.40)

Length sequence

: 71

Length match:

70