chr36_39

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

63.6

E-value:

1.1e-12

From sequence:

2472926

To sequence:

2472855

Alignments:

                                                                                           NC
                  (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005       1 GgagauaUAGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71     
                  :G:::::UAGC:CAGUGG AG:GCG::GG:CU A+AA:CC::AGG C:::GG UCGAA CC::::::::C:A
    chr36 2472926 AGCACCGUAGCGCAGUGGAAGCGCGAUGGGCUCAUAACCCAUAGGuCGUUGGAUCGAAACCAAUCGGUGCUA 2472855
                  *****************99***************************************************** PP

>>

RNAfold
>chr36_39
AGCACCGAUUGGUUUCGAUCCAACGACCUAUGGGUUAUGAGCCCAUCGCG
CUUCCACUGCGCUACGGUGCU
(((((((.((((.......))))......(((((((...))))))).((((.......))))..))))))) (-26.10)

Length sequence

: 71

Length match:

70