chr36_4

cmsearch-Rfam

Family :

MIR1122

Id:

RF00906

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00906

Description:

not description

Score:

32.4

E-value:

0.0019

From sequence:

1093022

To sequence:

1092895

Alignments:

                                           v                                                                     NC
                  ::::<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------<<<<<<<<<<<<___________>>>>>>>>>>>>--------- CS
  RF00906       1 uaaaUACUCCCUCCGUCCggaAaugcuUGUcuuaaAuuUGuauAaAuauGgAuGuaUcuAgacaUauuuUAGUucUagAuaCaUcCauaUUUAu 94     
                    ++UA: : : : G :::::A: : U   : U  AU+UGUAU  AUAUG:AU::AU: A:A+AUAU      U:U :AU::AU: AUAU UAU
    chr36 1093022 CCUGUAUAUGUAUAGAUGUAGAUGUAUGUAUGU--AUAUGUAUGUAUAUGUAUAUAUAUAUAUAUAU-----GUAUGUAUGUAUAGAUAUCUAU 1092936
                  **********************99888776666..66778888888888888888888888876654.....4********************* PP

                                 v                          NC
                  -------->>>>>>>>>>>>>>>>>>>>>>>>>>>>>:::: CS
  RF00906      95 aCAaaUuuaagACAagcauUuccGGACGGAGGGAGUAuauu 135    
                  A A+AU+UA :   A : :U::::: C : : : :UA+AU 
    chr36 1092935 AUAUAUCUAUAUAUAGAUAUCUACAUCUAUACAUAUACAUC 1092895
                  ***************************************** PP

RNAfold
>chr36_4
AUAGAUGUAUAUGUAUAGAUGUAGAUAUCUAUAUAUAGAUAUAUAUAGAU
AUCUAUACAUACAUACAUAUAUAUAUAUAUAUACAUAUACAUACAUAUAC
AUACAUACAUCUACAUCUAUACAUAUACAGGUCAG
.....(((((((((((((((((((((((((((((((....)))))))))))))..............(((((.(((.((((....)))).))).)))))............))))))))))))))))))...... (-38.20)

Length sequence

: 135

Length match:

126