chr36_40

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

60.9

E-value:

6.4e-12

From sequence:

2472999

To sequence:

2473070

Alignments:

                              v       v                                                    NC
                  (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005       1 GgagauaUAGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71     
                  GG:::U:U+::: AGUGGUA ::: :C:G:+UU    :C:G:AGG C:CGGGUUC+A UCCCG::A:::CC 
    chr36 2472999 GGUCGUUUGGUCUAGUGGUAUGAUUCCUGUUUUGGGUACAGGAGGuCACGGGUUCAAUUCCCGUAACGACCC 2473070
                  ************************************************************************ PP

>>

RNAfold
>chr36_40
GUCGUUUGGUCUAGUGGUAUGAUUCCUGUUUUGGGUACAGGAGGUCACGG
GUUCAAUUCCCGUAACGACCC
(((((.............)))))((((((.......))))))(((((((((.......)))))...)))). (-20.50)

Length sequence

: 71

Length match:

70