chr36_42

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

54.6

E-value:

3.8e-10

From sequence:

506048

To sequence:

506131

Alignments:

                                                                                              NC
                 (((((((,,<<<<___.____>>>>,<<<<<____~~~~~~>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgU.GGUAgaGCgucgGaCUua*[ 3]*uCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71    
                 ::::: :UAGCUCA+U GGUAGAGC+U::GACU++      UC::A GG CGC GGUUCGA UCC GC: :::::A
    chr36 506048 CCUUCUGUAGCUCAAUuGGUAGAGCAUGUGACUGU*[14]*UCACAGGGuCGCUGGUUCGAUUCCGGCCGGAAGGA 506131
                 *********************************87...9..*********************************** PP

>>

RNAfold
>chr36_42
CUUCUGUAGCUCAAUUGGUAGAGCAUGUGACUGUAGAGUUCGCAGGCAUC
ACAGGGUCGCUGGUUCGAUUCCGGCCGGAAGGA
((((((..((((........)))).(((((((....)).)))))(((........)))(((((.......))))))))))).. (-24.70)

Length sequence

: 83

Length match:

82