chr36_5

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

30.1

E-value:

0.008

From sequence:

1176821

To sequence:

1176720

Alignments:

                            v     v       v   v      vv                                 vv      v   v     v   v  NC
                  ::::::::<<<<<..-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-~~~~~~-->>>>>>>>>>>->>>>>>>>>>-->>>->>>->>>> CS
  RF01911       1 guuaGgaAGaaga..AGaaaGAGAGguccugaGAgcggUaGGaAUGGGaA*[74]*CCuCCCAUuCCuAucguUCucaggugCUCCuuCCucuu 160    
                  G  +GGAAGA G:    A:AGAG: G+: UGAG::  + AG:AA  GG:A       C:CC  UU:CU U  ::CUCA : + :CC:U  :C U
    chr36 1176821 GCGGGGAAGAGGGcaCAAGAGAGGUGCAAUGAGGACCAGAGAAAAGGGGA*[ 4]*ACCCCUUUUUCUCUCUUCCUCACUCACCCCCUCUCCGU 1176730
                  *************665999******************************9...7..69*******************************9**** PP

                             NC
                  >::::::::: CS
  RF01911     161 CCUUuuaguU 170    
                  CCUU ++ + 
    chr36 1176729 CCUUCAUACC 1176720
                  ********** PP

>>

RNAfold
>chr36_5
CAAACGUCUCAGAUCACUGCACUUAGCGACAGAGGUAUGAAGGACGGAGA
GGGGGUGAGUGAGGAAGAGAGAAAAAGGGGUGUACUCCCCUUUUCUCUGG
UCCUCAUUGCACCUCUCUUGUGCCCUCUUCCCCGCCCCCCCCCCCCGUAG
AUGAAACCGACCUCUCCGC
.........(((....)))......(((..((((((.......((((.(.(((((((((((((((..((((((((.((((......))))))))))))..))))))))((((.......)))).........)))))))...).))))...........)))))).))) (-60.20)

Length sequence

: 169

Length match:

100