chr36_6

cmsearch-Rfam

Family :

mir-241

Id:

RF00809

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00809

Description:

not description

Score:

31.7

E-value:

0.00031

From sequence:

2475859

To sequence:

2475935

Alignments:

                                v       v     vv     v         v      vv     v       v                 NC
                  ::::<<-<<<<-<<<<<<<<<<<-<<<<<<<<<<<<___~~~~~~>>>>>->>>>>>>->>>>>>>>>>>->>>>--->>:::: CS
  RF00809       1 aagaggUguCaAaGuuGagGcaGGuGcGaGaaauGaCGg*[18]*uCauuGuCuCgCaGCugCuuCaaCuGuGacuuaccuaug 96     
                   +G+::UGUCAAAG :G GGC: GUG::  A::UG CGG       CA::GU+ ::CA  :GCU C: CU UGAC   :: ++G
    chr36 2475859 GGGGCAUGUCAAAGUAGGGGCCGGUGAA--AUGUGUCGG*[ 1]*UCACAGUACUUCACGGGCUUCUUCUCUGACGCGUGGUCG 2475935
                  ***************************9..777887765...7..7899***99****99************************ PP

>>

RNAfold
>chr36_6
GCCAGAAGAGGGGCAUGUCAAAGUAGGGGCCGGUGAAAUGUGUCGGCUCA
CAGUACUUCACGGGCUUCUUCUCUGACGCGUGGUCGGCAGUGGCUG
((((......((.(((((((.((.(((((((.(((((.((((......))))....))))).))))))).)).))))..))).)).....)))).. (-35.60)

Length sequence

: 96

Length match:

75