chr36_7

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

30.5

E-value:

0.0024

From sequence:

1007015

To sequence:

1007116

Alignments:

                    vv v                 v                                                     v                 NC
                  ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-.<<<<<<<.<<<____________>>>->>>>>>>>>>->->>>>>>>>>>>>>>>>>>-- CS
  RF01064       1 aUcguuCgagucgCcgccCuucuCaCaCACCuc.aCuaaCa.CuaAccaCaGAUuuauaGAuGuuaGuaGGCGUuGuGggaaGggcgGcgacga 92     
                  A   : C  ::C::C:C C:::: :C:CAC::C  C::AC  :UA ++A A AU UAUA:  GU::G ::G GU:G: ::::G G:G::G::G 
    chr36 1007015 AAUAUACAGACCCACCCGCCCACUCCCCACACCcUCACACUcAUAUAUAUAUAUAUAUAUCGGUGUGGGUGGGUGGGUGUGGGUGGGUGGGUGC 1007108
                  *******************************96479***966**************************************************** PP

                    v vv   NC
                  ->>>>>:: CS
  RF01064      93 uGaacgua 100    
                   G :  + 
    chr36 1007109 GGGGGUCG 1007116
                  ******** PP

>>

RNAfold
>chr36_7
AUAUACAGACCCACCCGCCCACUCCCCACACCCUCACACUCAUAUAUAUA
UAUAUAUAUCGGUGUGGGUGGGUGGGUGUGGGUGGGUGGGUGCGGGGGUC
G
.......(((((.((((((((((((((((((((.(.((((((((((((((....)))))..))))))))).).))))))))).))))))))).))))))). (-63.40)

Length sequence

: 101

Length match:

100