chr36_9

cmsearch-Rfam

Family :

mir-301

Id:

RF02061

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

Not found

Description:

not description

Score:

32.4

E-value:

0.00066

From sequence:

1520317

To sequence:

1520416

Alignments:

                    vv                                                                     vv     NC
                  :<<<--<<<<<<<<-<<<<---<<<<<<<<---~~~~~~----->>>>>>>>------>>>>->>>>>>>>-->>>::: CS
  RF02061       1 UgcugaCaGguGCUCUGACuuuaUUGCACUACU*[11]*cuAGCAGUGCAAuAgUAUUGUCAAAGCacCuGagagcAGc 84     
                        CA:GUGCUCU :C +U:::GCAC:ACU        AG :GUGC:::   AUUG: A AGCAC:UG G    G 
    chr36 1520317 CUUUCCCACGUGCUCUCCCAAUGCCGCACCACU*[30]*GCAGUGGUGCGGC---AUUGGGAGAGCACGUGCGCCGUGG 1520416
                  *********************************...9..679**********...79********************** PP

RNAfold
>chr36_9
UUUCCCACGUGCUCUCCCAAUGCCGCACCACUGCAAACACCCUCGCGUGC
GUUCGUACGUCUGCAGUGGUGCGGCAUUGGGAGAGCACGUGCGCCGUGG
.....((((((((((((((((((((((((((((((.........((((((....)))))).))))))))))))))))))))))))))))))........ (-71.00)

Length sequence

: 99

Length match:

98