chr3_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

24.4

E-value:

0.00053

From sequence:

185662

To sequence:

185808

Alignments:

                  v          v   v     vv  v                                                                      NC
                 [[[,,,,,,(((((--((--(((((((((((,,<<<<<<<-<<<----~~~~~~>>>->>>>>>>,,,,<<_________._______________ CS
  RF02400    198 GCGAAuCuCaGGGCUCgGUGuGGaGaagGaGguGcCaaGuAGCCCCGU*[53]*GGCCaCuuGgCACUCacuaCCCCCUC.CCCUUCCCUUCUCCc 339   
                 G GAA  + :G: :   :UGUG+ G:       G:C::G: GCC C U      GGC :C::G:CA   :: AC     C C CUUCCCUUC C C
     chr3 185662 GCGAAGGCUGGUCGGAAUUGUGUGGUG-----GGGCGGGGGGCCUCAU*[ 7]*GGCACCUCGCCAGAUGGGACUGGUGCuCUCUUCCCUUCACUC 185753
                 ***********9998999999865544.....3***********9876...9..***************999998766551668889999998888 PP

                                     v  vv      v   v                             v  NC
                 __>>,,,,,,,,,,,,)))))))))-))--))--))))),,,,<<<<-<<_______>>->>>>]]] CS
  RF02400    340 CcguacccccCuCUCUCuCuuuCuCGCaucCuCUGCCCuCuCACCGgCGCGccGGGCGCAcCGGCGC 406   
                 C :: +++C CUCUC      :C   CA C: C : :C:  CACCG:CGC      CGC :CGGC C
     chr3 185754 CUCCCUUUCACUCUCC-----AC---CACCACCACCACCACCACCGCCGC----UUCGCUGCGGCUC 185808
                 8888777666665542.....33...5555555677799999********....678********** PP

>>

RNAfold
>chr3_1
CCGCGCGUGUGUCUGCGUGAGAGAUAGAGAGGGUGGAGGCGCCCGUGUAA
GGCACAGCCGUGCGAGACUAGUGCGUGCCGCAAAACUCGUAGACGGGACU
CCAACGAGGGCCAGUCCGAGAGCGACGCACAGACGACUGCGUUCACAUGA
GGGAAGACAAUGCGAAGGCUGGUCGGAAUUGUGUGGUGGGGCGGGGGGCC
UCAUAUAUGGGGGCACCUCGCCAGAUGGGACUGGUGCUCUCUUCCCUUCA
CUCCUCCCUUUCACUCUCCACCACCACCACCACCACCACCGCCGCUUCGC
UGCGGCUCUCUCUGUGAGUGUGCCGCAGAAUGAAAUUGCUGUACAAAAAG
ACGGUGAAGCAGGACAUGAGGCGAAAACUGAGGGGGGAGGGGGGAGGUGC
GUCUUUGGAUGGUGUGAUUGACACGAACGGGUGCUUUCUUCACCACCACA
GUUCCCCCCCCCCUCCCCUU
.(((.(((((.((((((((.((((..(((((((.((((.((.(.((((...)))).).))((((((.....((((...))))...))))))((.((((.......(((.((((((((.(..((.(((((....(((((((.(((.(((..(......).))).))).)).)))))....))))).))..((((((((.(((((....))))).).)))))))...).)))))))).)))...)))).)).)))).)))))))..)))))))...............(((((((((......))))..(((.....)))(((((.((((.......)))).)))))......)))))..))))))))))..))).........((((((((((((.((.(...((.(((.(((((.((..(.(((......))))..))..)))))))).))...))))))))))))))). (-200.20)

Length sequence

: 470

Length match:

145