chr3_3

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

40.7

E-value:

3.4e-06

From sequence:

50819

To sequence:

50721

Alignments:

                  v                            v v  v                         v  vv                                NC
                ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<<<<____________>>>->>>>>>>>>>->->.>>>>>>>>>>>>>>>>>--->>>> CS
  RF01064     1 aUcguuCgagucgCcgccCuucuCaCaCACCucaCuaaCaCuaAccaCaGAUuuauaGAuGuuaGuaGGCGUu.GuGggaaGggcgGcgacgauGaac 97   
                 U G:UC  :UC:CC::CC: C:C:C:C CC C CU  C::::  +ACA AU   ::: :G  AG  GG G : G:G:G :GG::GG:GA: A+GA:C
     chr3 50819 GUGGGUCCCUUCCCCUGCCCUCCCCCUCUCCCCACUCUCCUCG--UACAAAUCAGCGAGGGGAAGGAGGAGGAgGGGGGGGGGCAGGGGAACACGACC 50724
                *******************************************..5778899999***9999999999987651566778899*************** PP

                v   NC
                >:: CS
  RF01064    98 gua 100  
                  A
     chr3 50723 AGA 50721
                *** PP

>>

RNAfold
>chr3_3
UCUGGUCGUGUUCCCCUGCCCCCCCCCCUCCUCCUCCUUCCCCUCGCUGA
UUUGUACGAGGAGAGUGGGGAGAGGGGGAGGGCAGGGGAAGGGACCCACG
...((((.(.(((((((((((..(((((((.(((((.(((.(((((..........))))).))).)))))))))))).))))))))))).))))).... (-64.60)

Length sequence

: 100

Length match:

97