chr3_7

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

33.2

E-value:

1.6e-05

From sequence:

100839

To sequence:

100718

Alignments:

                                                                                                                  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________________>>---->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCC 96    
                 A++UGG+   G G  GGAGA :GGG  G G: :G      AGA  GAG  A   A  A++UGUGAGA++ AGA G+ A+ G U    CUC+ UCC 
     chr3 100839 AGAUGGAAGAGGGGAGGAGAGGGGGGGGGGAAGGC-----AGAGAGAGAGAGGGAGCAGGUGUGAGAGGGAGACGACACAGCU---CCUCU-UCC- 100754
                 ***********9*****************999997.....466668888899999999***********99999998887654...34777.666. PP

                                                          NC
                 >>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     97 aUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                      C: :C C  CCC: GCUCCU+U +C CC CU+ U 
     chr3 100753 ----UCCUCCUCUUCCCUCGCUCCUAUGCCGCCACUCAUG 100718
                 ....5999******************************** PP

>>

RNAfold
>chr3_7
CCUCUCCAUGAGUGGCGGCAUAGGAGCGAGGGAAGAGGAGGAGGAAGAGG
AGCUGUGUCGUCUCCCUCUCACACCUGCUCCCUCUCUCUCUCUGCCUUCC
CCCCCCCCUCUCCUCCCCUCUUCCAUCUCGCGCAC
((.(((...))).))........(.(((((((((((((.((((((((((((((.((((.(.........)))))..))).))))).........................))))))))))))))..))))).).. (-47.60)

Length sequence

: 135

Length match:

120